Type |
Details |
Score |
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
148
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Guo Q |
Year: |
2004 |
Journal: |
J Biol Chem |
Title: |
AATF inhibits aberrant production of amyloid beta peptide 1-42 by interacting directly with Par-4. |
Volume: |
279 |
Issue: |
6 |
Pages: |
4596-603 |
|
•
•
•
•
•
|
Publication |
First Author: |
Watanabe Y |
Year: |
2007 |
Journal: |
Clin Cancer Res |
Title: |
PRDM5 identified as a target of epigenetic silencing in colorectal and gastric cancer. |
Volume: |
13 |
Issue: |
16 |
Pages: |
4786-94 |
|
•
•
•
•
•
|
Publication |
First Author: |
Burkitt Wright EMM |
Year: |
2011 |
Journal: |
Am J Hum Genet |
Title: |
Mutations in PRDM5 in brittle cornea syndrome identify a pathway regulating extracellular matrix development and maintenance. |
Volume: |
88 |
Issue: |
6 |
Pages: |
767-777 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
Teashirt 3 is a transcriptional regulator involved in developmental processes []. It has function in association with APBB1, SET and HDAC factors as a transcriptional repressor, that inhibits the expression of CASP4. TSHZ3-mediated transcription repression involves the recruitment of histone deacetylases HDAC1 and HDAC2. It associates with chromatin in a region surrounding the CASP4 transcriptional start site(s). It regulates the development of neurons involved in both respiratory rhythm and airflow control []. It promotes maintenance of nucleus ambiguus (nA) motoneurons, which govern upper airway function, and establishes a respiratory rhythm generator (RRG) activity compatible with survival at birth. It is involved in the differentiation of the proximal uretic smooth muscle cells during developmental processes []. It is involved in the up-regulation of myocardin, that directs the expression of smooth muscle cells in the proximal ureter []. |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This entry represents the PR/SET domain found in PR domain zinc finger protein 5 (PRDM5). PRDM5 is a sequence-specific DNA-binding transcription factor that represses transcription at least in part by recruitment of the histone methyltransferase EHMT2/G9A and histone deacetylases such as HDAC1 []. Mutation of the PRDM5 gene has been linked to Brittle cornea syndrome 2 (BCS2) [].The PRDM family members are characterised by the presence of a N-terminal PR (PRDI-BF1 and RIZ1 homology) domain followed by multiple zinc fingers which confer DNA binding activity. PR domains are only distantly related to the classical SET methyltransferase domains []. They are involved in epigenetic regulation of gene expression through their intrinsic histone methyltransferase activity or via interactions with other chromatin modifying enzymes []. |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Publication |
First Author: |
Kao HY |
Year: |
2000 |
Journal: |
Genes Dev |
Title: |
Isolation of a novel histone deacetylase reveals that class I and class II deacetylases promote SMRT-mediated repression. |
Volume: |
14 |
Issue: |
1 |
Pages: |
55-66 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wei LN |
Year: |
2000 |
Journal: |
J Biol Chem |
Title: |
Receptor-interacting protein 140 directly recruits histone deacetylases for gene silencing. |
Volume: |
275 |
Issue: |
52 |
Pages: |
40782-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rowbotham SP |
Year: |
2011 |
Journal: |
Mol Cell |
Title: |
Maintenance of silent chromatin through replication requires SWI/SNF-like chromatin remodeler SMARCAD1. |
Volume: |
42 |
Issue: |
3 |
Pages: |
285-96 |
|
•
•
•
•
•
|
Publication |
First Author: |
Damal Villivalam S |
Year: |
2020 |
Journal: |
Nat Commun |
Title: |
TET1 is a beige adipocyte-selective epigenetic suppressor of thermogenesis. |
Volume: |
11 |
Issue: |
1 |
Pages: |
4313 |
|
•
•
•
•
•
|
Publication |
First Author: |
Benjamin DI |
Year: |
2022 |
Journal: |
Cell Metab |
Title: |
Fasting induces a highly resilient deep quiescent state in muscle stem cells via ketone body signaling. |
Volume: |
34 |
Issue: |
6 |
Pages: |
902-918.e6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li Y |
Year: |
2018 |
Journal: |
Nat Commun |
Title: |
Reducing histone acetylation rescues cognitive deficits in a mouse model of Fragile X syndrome. |
Volume: |
9 |
Issue: |
1 |
Pages: |
2494 |
|
•
•
•
•
•
|
Publication |
First Author: |
Fedele M |
Year: |
2006 |
Journal: |
Cancer Cell |
Title: |
HMGA2 induces pituitary tumorigenesis by enhancing E2F1 activity. |
Volume: |
9 |
Issue: |
6 |
Pages: |
459-71 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mirza AN |
Year: |
2019 |
Journal: |
Cell |
Title: |
LAP2 Proteins Chaperone GLI1 Movement between the Lamina and Chromatin to Regulate Transcription. |
Volume: |
176 |
Issue: |
1-2 |
Pages: |
198-212.e15 |
|
•
•
•
•
•
|
Publication |
First Author: |
Stolt CC |
Year: |
2008 |
Journal: |
Nucleic Acids Res |
Title: |
The transcription factor Sox5 modulates Sox10 function during melanocyte development. |
Volume: |
36 |
Issue: |
17 |
Pages: |
5427-40 |
|
•
•
•
•
•
|
Publication |
First Author: |
Qi Z |
Year: |
2017 |
Journal: |
Nat Commun |
Title: |
BMP restricts stemness of intestinal Lgr5+ stem cells by directly suppressing their signature genes. |
Volume: |
8 |
|
Pages: |
13824 |
|
•
•
•
•
•
|
Publication |
First Author: |
Qiu Z |
Year: |
2012 |
Journal: |
J Neurosci |
Title: |
The Rett syndrome protein MeCP2 regulates synaptic scaling. |
Volume: |
32 |
Issue: |
3 |
Pages: |
989-94 |
|
•
•
•
•
•
|
Publication |
First Author: |
de Jesús TJ |
Year: |
2020 |
Journal: |
iScience |
Title: |
NF-κB c-Rel Dictates the Inflammatory Threshold by Acting as a Transcriptional Repressor. |
Volume: |
23 |
Issue: |
3 |
Pages: |
100876 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li HF |
Year: |
2010 |
Journal: |
J Am Soc Nephrol |
Title: |
ATF3-mediated epigenetic regulation protects against acute kidney injury. |
Volume: |
21 |
Issue: |
6 |
Pages: |
1003-13 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kwon HJ |
Year: |
2010 |
Journal: |
J Immunol |
Title: |
Vitamin D3 upregulated protein 1 suppresses TNF-α-induced NF-κB activation in hepatocarcinogenesis. |
Volume: |
185 |
Issue: |
7 |
Pages: |
3980-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Do-Umehara HC |
Year: |
2013 |
Journal: |
Nat Immunol |
Title: |
Suppression of inflammation and acute lung injury by Miz1 via repression of C/EBP-δ. |
Volume: |
14 |
Issue: |
5 |
Pages: |
461-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Xue S |
Year: |
2016 |
Journal: |
Cell Rep |
Title: |
TET3 Inhibits Type I IFN Production Independent of DNA Demethylation. |
Volume: |
16 |
Issue: |
4 |
Pages: |
1096-1105 |
|
•
•
•
•
•
|
Publication |
First Author: |
Xia M |
Year: |
2017 |
Journal: |
Nat Commun |
Title: |
Ash1l and lnc-Smad3 coordinate Smad3 locus accessibility to modulate iTreg polarization and T cell autoimmunity. |
Volume: |
8 |
|
Pages: |
15818 |
|
•
•
•
•
•
|
Publication |
First Author: |
Darden CM |
Year: |
2022 |
Journal: |
iScience |
Title: |
Calcineurin/NFATc2 and PI3K/AKT signaling maintains β-cell identity and function during metabolic and inflammatory stress. |
Volume: |
25 |
Issue: |
4 |
Pages: |
104125 |
|
•
•
•
•
•
|
Publication |
First Author: |
Turnbull RE |
Year: |
2020 |
Journal: |
Nat Commun |
Title: |
The MiDAC histone deacetylase complex is essential for embryonic development and has a unique multivalent structure. |
Volume: |
11 |
Issue: |
1 |
Pages: |
3252 |
|
•
•
•
•
•
|
Publication |
First Author: |
Contreras AU |
Year: |
2013 |
Journal: |
J Cell Biol |
Title: |
Deacetylation of p53 induces autophagy by suppressing Bmf expression. |
Volume: |
201 |
Issue: |
3 |
Pages: |
427-37 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liu DX |
Year: |
2005 |
Journal: |
Genes Dev |
Title: |
Regulation of neuron survival and death by p130 and associated chromatin modifiers. |
Volume: |
19 |
Issue: |
6 |
Pages: |
719-32 |
|
•
•
•
•
•
|
Publication |
First Author: |
Fedele M |
Year: |
2006 |
Journal: |
Cell Div |
Title: |
E2F1 activation is responsible for pituitary adenomas induced by HMGA2 gene overexpression. |
Volume: |
1 |
|
Pages: |
17 |
|
•
•
•
•
•
|
Publication |
First Author: |
Fedele M |
Year: |
2006 |
Journal: |
Cell Cycle |
Title: |
Critical role of the HMGA2 gene in pituitary adenomas. |
Volume: |
5 |
Issue: |
18 |
Pages: |
2045-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kim SM |
Year: |
2007 |
Journal: |
Exp Cell Res |
Title: |
The histone methyltransferase activity of WHISTLE is important for the induction of apoptosis and HDAC1-mediated transcriptional repression. |
Volume: |
313 |
Issue: |
5 |
Pages: |
975-83 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bottardi S |
Year: |
2009 |
Journal: |
Mol Cell Biol |
Title: |
Ikaros and GATA-1 combinatorial effect is required for silencing of human gamma-globin genes. |
Volume: |
29 |
Issue: |
6 |
Pages: |
1526-37 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang K |
Year: |
2013 |
Journal: |
Dev Biol |
Title: |
Depletion of Suds3 reveals an essential role in early lineage specification. |
Volume: |
373 |
Issue: |
2 |
Pages: |
359-72 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shimazu T |
Year: |
2013 |
Journal: |
Science |
Title: |
Suppression of oxidative stress by β-hydroxybutyrate, an endogenous histone deacetylase inhibitor. |
Volume: |
339 |
Issue: |
6116 |
Pages: |
211-4 |
|
•
•
•
•
•
|
Publication |
First Author: |
Winter S |
Year: |
2008 |
Journal: |
EMBO J |
Title: |
14-3-3 proteins recognize a histone code at histone H3 and are required for transcriptional activation. |
Volume: |
27 |
Issue: |
1 |
Pages: |
88-99 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wei N |
Year: |
2014 |
Journal: |
Mol Cell |
Title: |
Oxidative stress diverts tRNA synthetase to nucleus for protection against DNA damage. |
Volume: |
56 |
Issue: |
2 |
Pages: |
323-32 |
|
•
•
•
•
•
|
Publication |
First Author: |
Huang X |
Year: |
2014 |
Journal: |
Biochem Biophys Res Commun |
Title: |
Histone deacetylase1 promotes TGF-β1-mediated early chondrogenesis through down-regulating canonical Wnt signaling. |
Volume: |
453 |
Issue: |
4 |
Pages: |
810-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tang YN |
Year: |
2015 |
Journal: |
Nat Commun |
Title: |
Epigenetic regulation of Smad2 and Smad3 by profilin-2 promotes lung cancer growth and metastasis. |
Volume: |
6 |
|
Pages: |
8230 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hagelkruys A |
Year: |
2015 |
Journal: |
Mol Cell Biol |
Title: |
Essential Nonredundant Function of the Catalytic Activity of Histone Deacetylase 2 in Mouse Development. |
Volume: |
36 |
Issue: |
3 |
Pages: |
462-74 |
|
•
•
•
•
•
|
Publication |
First Author: |
Xu X |
Year: |
2024 |
Journal: |
Sci Adv |
Title: |
Nzf2 promotes oligodendrocyte differentiation and regeneration via repressing HDAC1-mediated histone deacetylation. |
Volume: |
10 |
Issue: |
50 |
Pages: |
eadf8405 |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
526
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
76
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
88
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
526
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
denDekker AD |
Year: |
2012 |
Journal: |
Cancer Res |
Title: |
Rat Mcs1b is concordant to the genome-wide association-identified breast cancer risk locus at human 5q11.2 and MIER3 is a candidate cancer susceptibility gene. |
Volume: |
72 |
Issue: |
22 |
Pages: |
6002-12 |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Publication |
First Author: |
Manfroid I |
Year: |
2004 |
Journal: |
Development |
Title: |
Three putative murine Teashirt orthologues specify trunk structures in Drosophila in the same way as the Drosophila teashirt gene. |
Volume: |
131 |
Issue: |
5 |
Pages: |
1065-73 |
|
•
•
•
•
•
|
Publication |
First Author: |
Iso T |
Year: |
2001 |
Journal: |
Mol Cell Biol |
Title: |
HERP, a novel heterodimer partner of HES/E(spl) in Notch signaling. |
Volume: |
21 |
Issue: |
17 |
Pages: |
6080-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wiper-Bergeron N |
Year: |
2007 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Glucocorticoid-stimulated preadipocyte differentiation is mediated through acetylation of C/EBPbeta by GCN5. |
Volume: |
104 |
Issue: |
8 |
Pages: |
2703-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang W |
Year: |
2012 |
Journal: |
Nat Med |
Title: |
Cidea is an essential transcriptional coactivator regulating mammary gland secretion of milk lipids. |
Volume: |
18 |
Issue: |
2 |
Pages: |
235-43 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang Y |
Year: |
1999 |
Journal: |
Genes Dev |
Title: |
Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation. |
Volume: |
13 |
Issue: |
15 |
Pages: |
1924-35 |
|
•
•
•
•
•
|
Publication |
First Author: |
Iwase S |
Year: |
2004 |
Journal: |
Biochem Biophys Res Commun |
Title: |
Characterization of BHC80 in BRAF-HDAC complex, involved in neuron-specific gene repression. |
Volume: |
322 |
Issue: |
2 |
Pages: |
601-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ghaleb AM |
Year: |
2016 |
Journal: |
Mol Cancer Res |
Title: |
KLF4 Suppresses Tumor Formation in Genetic and Pharmacological Mouse Models of Colonic Tumorigenesis. |
Volume: |
14 |
Issue: |
4 |
Pages: |
385-96 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chaturvedi P |
Year: |
2014 |
Journal: |
Physiol Genomics |
Title: |
Differential regulation of DNA methylation versus histone acetylation in cardiomyocytes during HHcy in vitro and in vivo: an epigenetic mechanism. |
Volume: |
46 |
Issue: |
7 |
Pages: |
245-55 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lahoti TS |
Year: |
2015 |
Journal: |
Toxicol Sci |
Title: |
Aryl Hydrocarbon Receptor Activation Synergistically Induces Lipopolysaccharide-Mediated Expression of Proinflammatory Chemokine (c-c motif) Ligand 20. |
Volume: |
148 |
Issue: |
1 |
Pages: |
229-40 |
|
•
•
•
•
•
|
Publication |
First Author: |
Papizan JB |
Year: |
2011 |
Journal: |
Genes Dev |
Title: |
Nkx2.2 repressor complex regulates islet β-cell specification and prevents β-to-α-cell reprogramming. |
Volume: |
25 |
Issue: |
21 |
Pages: |
2291-305 |
|
•
•
•
•
•
|
Publication |
First Author: |
Astleford-Hopper K |
Year: |
2025 |
Journal: |
JBMR Plus |
Title: |
Lysine specific demethylase 1 conditional myeloid cell knockout mice have decreased osteoclast differentiation due to increased IFN-β gene expression. |
Volume: |
9 |
Issue: |
1 |
Pages: |
ziae142 |
|
•
•
•
•
•
|
Publication |
First Author: |
Vengoji R |
Year: |
2021 |
Journal: |
J Exp Clin Cancer Res |
Title: |
Differential gene expression-based connectivity mapping identified novel drug candidate and improved Temozolomide efficacy for Glioblastoma. |
Volume: |
40 |
Issue: |
1 |
Pages: |
335 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kumar P |
Year: |
2014 |
Journal: |
J Biol Chem |
Title: |
Histone deacetylase inhibitors modulate the transcriptional regulation of guanylyl cyclase/natriuretic peptide receptor-a gene: interactive roles of modified histones, histone acetyltransferase, p300, AND Sp1. |
Volume: |
289 |
Issue: |
10 |
Pages: |
6991-7002 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lospinoso Severini L |
Year: |
2024 |
Journal: |
Cell Death Differ |
Title: |
SALL4 is a CRL3(REN/KCTD11) substrate that drives Sonic Hedgehog-dependent medulloblastoma. |
Volume: |
31 |
Issue: |
2 |
Pages: |
170-187 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kumar V |
Year: |
2019 |
Journal: |
Front Mol Neurosci |
Title: |
Simvastatin Restores HDAC1/2 Activity and Improves Behavioral Deficits in Angelman Syndrome Model Mouse. |
Volume: |
12 |
|
Pages: |
289 |
|
•
•
•
•
•
|
Publication |
First Author: |
Palumbo-Zerr K |
Year: |
2015 |
Journal: |
Nat Med |
Title: |
Orphan nuclear receptor NR4A1 regulates transforming growth factor-β signaling and fibrosis. |
Volume: |
21 |
Issue: |
2 |
Pages: |
150-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yeh IJ |
Year: |
2013 |
Journal: |
Biochem J |
Title: |
HEXIM1 down-regulates hypoxia-inducible factor-1α protein stability. |
Volume: |
456 |
Issue: |
2 |
Pages: |
195-204 |
|
•
•
•
•
•
|
Publication |
First Author: |
Inoue K |
Year: |
2006 |
Journal: |
J Cell Sci |
Title: |
Inefficient reprogramming of the hematopoietic stem cell genome following nuclear transfer. |
Volume: |
119 |
Issue: |
Pt 10 |
Pages: |
1985-91 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mishra VK |
Year: |
2017 |
Journal: |
Cancer Res |
Title: |
Krüppel-like Transcription Factor KLF10 Suppresses TGFβ-Induced Epithelial-to-Mesenchymal Transition via a Negative Feedback Mechanism. |
Volume: |
77 |
Issue: |
9 |
Pages: |
2387-2400 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yoo YG |
Year: |
2008 |
Journal: |
Oncogene |
Title: |
Hepatitis B virus X protein induces the expression of MTA1 and HDAC1, which enhances hypoxia signaling in hepatocellular carcinoma cells. |
Volume: |
27 |
Issue: |
24 |
Pages: |
3405-13 |
|
•
•
•
•
•
|
Publication |
First Author: |
Funasaka T |
Year: |
2011 |
Journal: |
Cell Cycle |
Title: |
RNA export factor RAE1 contributes to NUP98-HOXA9-mediated leukemogenesis. |
Volume: |
10 |
Issue: |
9 |
Pages: |
1456-67 |
|
•
•
•
•
•
|
Publication |
First Author: |
Feng B |
Year: |
2014 |
Journal: |
Diabetes |
Title: |
Mitogen-activated protein kinase phosphatase 3 (MKP-3)-deficient mice are resistant to diet-induced obesity. |
Volume: |
63 |
Issue: |
9 |
Pages: |
2924-34 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang Z |
Year: |
2020 |
Journal: |
J Clin Invest |
Title: |
E4BP4-mediated inhibition of T follicular helper cell differentiation is compromised in autoimmune diseases. |
Volume: |
130 |
Issue: |
7 |
Pages: |
3717-3733 |
|
•
•
•
•
•
|
Publication |
First Author: |
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