Type |
Details |
Score |
Gene |
Type: |
gene |
Organism: |
human |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
macaque, rhesus |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
frog, western clawed |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
cattle |
|
•
•
•
•
•
|
Gene |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
chimpanzee |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
dog, domestic |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
chicken |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:1763117 |
Assay Type: |
RNA in situ |
Annotation Date: |
2009-01-15 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:1750322 |
|
Stage: |
TS22 |
Assay Id: |
MGI:3825793 |
Age: |
embryonic day 14.5 |
Image: |
Additional file 4 Cald1 |
|
Specimen Label: |
Additional file 4 Cald1 |
Detected: |
false |
Specimen Num: |
1 |
|
•
•
•
•
•
|
Publication |
First Author: |
Jang SM |
Year: |
2013 |
Journal: |
J Cell Sci |
Title: |
Sox4-mediated caldesmon expression facilitates differentiation of skeletal myoblasts. |
Volume: |
126 |
Issue: |
Pt 22 |
Pages: |
5178-88 |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus caroli |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus pahari |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus spretus |
|
•
•
•
•
•
|
Publication |
First Author: |
Deng M |
Year: |
2013 |
Journal: |
Am J Physiol Renal Physiol |
Title: |
Amino acid mutations in the caldesmon COOH-terminal functional domain increase force generation in bladder smooth muscle. |
Volume: |
305 |
Issue: |
10 |
Pages: |
F1455-65 |
|
•
•
•
•
•
|
Publication |
First Author: |
Guo H |
Year: |
2005 |
Journal: |
Biochem Biophys Res Commun |
Title: |
Specific disruption of smooth muscle caldesmon expression in mice. |
Volume: |
330 |
Issue: |
4 |
Pages: |
1132-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Guo H |
Year: |
2013 |
Journal: |
Pflugers Arch |
Title: |
Ablation of smooth muscle caldesmon affects the relaxation kinetics of arterial muscle. |
Volume: |
465 |
Issue: |
2 |
Pages: |
283-94 |
|
•
•
•
•
•
|
Publication |
First Author: |
Walker G |
Year: |
1989 |
Journal: |
J Biol Chem |
Title: |
The role of caldesmon in the regulation of receptor capping in mouse T-lymphoma cell. |
Volume: |
264 |
Issue: |
1 |
Pages: |
496-500 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3815647 |
Assay Type: |
RT-PCR |
Annotation Date: |
2008-11-20 |
Strength: |
Present |
Sex: |
Female |
Emaps: |
EMAPS:3102528 |
|
Stage: |
TS28 |
Assay Id: |
MGI:3816451 |
Age: |
postnatal |
|
|
Specimen Label: |
Metaphase II |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3815647 |
Assay Type: |
RT-PCR |
Annotation Date: |
2008-11-20 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:360422 |
|
Stage: |
TS02 |
Assay Id: |
MGI:3816451 |
Age: |
embryonic day 1.5 |
|
|
Specimen Label: |
2-cell embryo |
Detected: |
false |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3815647 |
Assay Type: |
RT-PCR |
Annotation Date: |
2008-11-20 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:360433 |
|
Stage: |
TS03 |
Assay Id: |
MGI:3816451 |
Age: |
embryonic day 2.0 |
|
|
Specimen Label: |
4-cell embryo |
Detected: |
false |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3815647 |
Assay Type: |
RT-PCR |
Annotation Date: |
2008-11-20 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:360443 |
|
Stage: |
TS03 |
Assay Id: |
MGI:3816451 |
Age: |
embryonic day 2.5 |
|
|
Specimen Label: |
8-cell embryo |
Detected: |
false |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3815647 |
Assay Type: |
RT-PCR |
Annotation Date: |
2008-11-20 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:360453 |
|
Stage: |
TS03 |
Assay Id: |
MGI:3816451 |
Age: |
embryonic day 3.0 |
|
|
Specimen Label: |
Morula |
Detected: |
false |
Specimen Num: |
5 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3815647 |
Assay Type: |
RT-PCR |
Annotation Date: |
2008-11-20 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:360464 |
|
Stage: |
TS04 |
Assay Id: |
MGI:3816451 |
Age: |
embryonic day 3.5 |
|
|
Specimen Label: |
E3.5 blastocyst |
Detected: |
false |
Specimen Num: |
6 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3815647 |
Assay Type: |
RT-PCR |
Annotation Date: |
2008-11-20 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:360465 |
|
Stage: |
TS05 |
Assay Id: |
MGI:3816451 |
Age: |
embryonic day 4.5 |
|
|
Specimen Label: |
E4.5 blastocyst |
Detected: |
true |
Specimen Num: |
7 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3815647 |
Assay Type: |
RT-PCR |
Annotation Date: |
2008-11-20 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:160415 |
|
Stage: |
TS05 |
Assay Id: |
MGI:3816451 |
Age: |
embryonic day 4.5 |
|
|
Specimen Label: |
E4.5 inner cell mass |
Detected: |
false |
Specimen Num: |
8 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6444194 |
Assay Type: |
RT-PCR |
Annotation Date: |
2020-07-28 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1716828 |
|
Stage: |
TS28 |
Assay Id: |
MGI:6445539 |
Age: |
postnatal week 5 |
|
|
Specimen Label: |
wild type control |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6444194 |
Assay Type: |
RT-PCR |
Annotation Date: |
2020-07-28 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1716828 |
|
Stage: |
TS28 |
Assay Id: |
MGI:6445539 |
Age: |
postnatal week 5 |
|
|
Specimen Label: |
miR-183C |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7284445 |
Assay Type: |
RT-PCR |
Annotation Date: |
2022-06-10 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1610524 |
|
Stage: |
TS24 |
Assay Id: |
MGI:7284692 |
Age: |
embryonic day 16.5 |
|
|
Specimen Label: |
WT |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7284445 |
Assay Type: |
RT-PCR |
Annotation Date: |
2022-06-10 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1610524 |
|
Stage: |
TS24 |
Assay Id: |
MGI:7284692 |
Age: |
embryonic day 16.5 |
|
|
Specimen Label: |
DKO |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7736316 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2024-10-08 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1761324 |
Pattern: |
Regionally restricted |
Stage: |
TS24 |
Assay Id: |
MGI:7736361 |
Age: |
embryonic day 16.5 |
|
Note: |
A segment of the arch (actin-negative cells) which lacked expression in its outer media cell layers was shown, in contrast to more up- and downstream regions. Expressed in the most cells expressing smooth muscle-specific proteins. Lower levels of expression were visible in the entire B-segment of the aorta, marked a more extensive area than the distinct ring of actin-indigent cells. |
Specimen Label: |
4f |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7736316 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2024-10-08 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1761327 |
Pattern: |
Regionally restricted |
Stage: |
TS27 |
Assay Id: |
MGI:7736361 |
Age: |
postnatal newborn |
|
Note: |
Lower levels of expression were visible in the entire B-segment of the aorta, marked a more extensive area than the distinct ring of actin-indigent cells. |
Specimen Label: |
not shown |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3145361 |
Assay Type: |
RNA in situ |
Annotation Date: |
2009-01-23 |
Strength: |
Ambiguous |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603911 |
Pattern: |
Not Specified |
Stage: |
TS11 |
Assay Id: |
MGI:3828591 |
Age: |
embryonic day 7.5 |
|
Note: |
Expression is weak to non-existent. |
Specimen Label: |
E7.5 |
|
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3145361 |
Assay Type: |
RNA in situ |
Annotation Date: |
2009-01-23 |
Strength: |
Ambiguous |
Sex: |
Not Specified |
Emaps: |
EMAPS:1603913 |
Pattern: |
Not Specified |
Stage: |
TS13 |
Assay Id: |
MGI:3828591 |
Age: |
embryonic day 8.5 |
|
Note: |
Expression is weak to non-existent. |
Specimen Label: |
E8.5 |
|
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:1763117 |
Assay Type: |
RNA in situ |
Annotation Date: |
2019-12-13 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3806722 |
Pattern: |
Not Specified |
Stage: |
TS22 |
Assay Id: |
MGI:6380660 |
Age: |
embryonic day 14.5 |
Image: |
1A9 |
|
Specimen Label: |
1A9 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ryan AM |
Year: |
1997 |
Journal: |
Anim Genet |
Title: |
Chromosomal assignment of six muscle-specific genes in cattle. |
Volume: |
28 |
Issue: |
2 |
Pages: |
84-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mukhopadhyay UK |
Year: |
2009 |
Journal: |
Mol Cell Biol |
Title: |
p53 suppresses Src-induced podosome and rosette formation and cellular invasiveness through the upregulation of caldesmon. |
Volume: |
29 |
Issue: |
11 |
Pages: |
3088-98 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bergwerff M |
Year: |
1999 |
Journal: |
Cardiovasc Res |
Title: |
Unique vascular morphology of the fourth aortic arches: possible implications for pathogenesis of type-B aortic arch interruption and anomalous right subclavian artery. |
Volume: |
44 |
Issue: |
1 |
Pages: |
185-96 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mahendrasingam S |
Year: |
2011 |
Journal: |
J Histochem Cytochem |
Title: |
Subcellular distribution and relative expression of fibrocyte markers in the CD/1 mouse cochlea assessed by semiquantitative immunogold electron microscopy. |
Volume: |
59 |
Issue: |
11 |
Pages: |
984-1000 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yamada H |
Year: |
1999 |
Journal: |
Hypertension |
Title: |
AT2 receptor and vascular smooth muscle cell differentiation in vascular development. |
Volume: |
33 |
Issue: |
6 |
Pages: |
1414-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Boettger T |
Year: |
2009 |
Journal: |
J Clin Invest |
Title: |
Acquisition of the contractile phenotype by murine arterial smooth muscle cells depends on the Mir143/145 gene cluster. |
Volume: |
119 |
Issue: |
9 |
Pages: |
2634-47 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bianchi-Smiraglia A |
Year: |
2013 |
Journal: |
Cell Cycle |
Title: |
Integrin-β5 and zyxin mediate formation of ventral stress fibers in response to transforming growth factor β. |
Volume: |
12 |
Issue: |
21 |
Pages: |
3377-89 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li J |
Year: |
2006 |
Journal: |
Differentiation |
Title: |
Serum response factor, its cofactors, and epithelial-mesenchymal signaling in urinary bladder smooth muscle formation. |
Volume: |
74 |
Issue: |
1 |
Pages: |
30-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Carvalho RL |
Year: |
2004 |
Journal: |
Development |
Title: |
Defective paracrine signalling by TGFbeta in yolk sac vasculature of endoglin mutant mice: a paradigm for hereditary haemorrhagic telangiectasia. |
Volume: |
131 |
Issue: |
24 |
Pages: |
6237-47 |
|
•
•
•
•
•
|
Publication |
First Author: |
Jia X |
Year: |
2018 |
Journal: |
FASEB J |
Title: |
Loss of sonic hedgehog gene leads to muscle development disorder and megaesophagus in mice. |
Volume: |
32 |
Issue: |
10 |
Pages: |
5703-5715 |
|
•
•
•
•
•
|
Publication |
First Author: |
Jeanes A |
Year: |
2005 |
Journal: |
Reproduction |
Title: |
Evaluation of candidate markers for the peritubular myoid cell lineage in the developing mouse testis. |
Volume: |
130 |
Issue: |
4 |
Pages: |
509-16 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liu N |
Year: |
2008 |
Journal: |
Genes Dev |
Title: |
microRNA-133a regulates cardiomyocyte proliferation and suppresses smooth muscle gene expression in the heart. |
Volume: |
22 |
Issue: |
23 |
Pages: |
3242-54 |
|
•
•
•
•
•
|
Publication |
First Author: |
Trivedi CM |
Year: |
2010 |
Journal: |
Dev Cell |
Title: |
Hopx and Hdac2 interact to modulate Gata4 acetylation and embryonic cardiac myocyte proliferation. |
Volume: |
19 |
Issue: |
3 |
Pages: |
450-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
de Groot NE |
Year: |
2020 |
Journal: |
Sci Rep |
Title: |
Heterozygous loss of Rbm24 in the adult mouse heart increases sarcomere slack length but does not affect function. |
Volume: |
10 |
Issue: |
1 |
Pages: |
7687 |
|
•
•
•
•
•
|
Publication |
First Author: |
Godin P |
Year: |
2020 |
Journal: |
Reproduction |
Title: |
YAP and TAZ are required for the postnatal development and the maintenance of the structural integrity of the oviduct. |
Volume: |
160 |
Issue: |
2 |
Pages: |
307-318 |
|
•
•
•
•
•
|
Publication |
First Author: |
Copeland NG |
Year: |
1993 |
Journal: |
Science |
Title: |
A genetic linkage map of the mouse: current applications and future prospects. |
Volume: |
262 |
Issue: |
5130 |
Pages: |
57-66 |
|
•
•
•
•
•
|
Publication |
First Author: |
The UK Mouse Genome Centre European Consortium |
Year: |
2000 |
Journal: |
Database Release |
Title: |
European Consortium EST Radiation Hybrid Database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Abou Nader N |
Year: |
2022 |
Journal: |
Int J Mol Sci |
Title: |
Targeted Disruption of Lats1 and Lats2 in Mice Impairs Testis Development and Alters Somatic Cell Fate. |
Volume: |
23 |
Issue: |
21 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Gurdziel K |
Year: |
2016 |
Journal: |
Dev Dyn |
Title: |
Transcriptome of the inner circular smooth muscle of the developing mouse intestine: Evidence for regulation of visceral smooth muscle genes by the hedgehog target gene, cJun. |
Volume: |
245 |
Issue: |
5 |
Pages: |
614-26 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lumayag S |
Year: |
2013 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration. |
Volume: |
110 |
Issue: |
6 |
Pages: |
E507-16 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
187
|
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Tamplin OJ |
Year: |
2008 |
Journal: |
BMC Genomics |
Title: |
Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives. |
Volume: |
9 |
|
Pages: |
511 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hoffman BG |
Year: |
2008 |
Journal: |
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2002 |
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MGC Data curation in Mouse Genome Informatics |
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Wellcome Trust Sanger Institute |
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2009 |
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MGI Direct Data Submission |
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Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute |
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The Gene Ontology Consortium |
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2014 |
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Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs |
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Mouse Genome Informatics Scientific Curators |
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2003 |
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2003 |
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Proc Natl Acad Sci U S A |
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Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
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2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
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The Jackson Laboratory Mouse Radiation Hybrid Database |
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Nature |
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The Gene Ontology Consortium |
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2010 |
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Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
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Mouse Genome Informatics Computational Sequence to Gene Associations |
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2010 |
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Annotation inferences using phylogenetic trees |
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Mouse Genome Informatics Scientific Curators |
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2009 |
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Database Download |
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Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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Database Download |
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Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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Mouse Genome Database and National Center for Biotechnology Information |
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Mouse Genome Informatics Group |
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Mouse Genome Informatics Scientific Curators |
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2005 |
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Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
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Database Download |
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Mouse Genome Informatics Scientific Curators |
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2005 |
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Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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Allen Institute for Brain Science |
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2004 |
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Allen Institute |
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Allen Brain Atlas: mouse riboprobes |
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