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Publication : Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations

First Author  Mouse Genome Informatics Scientific Curators Year  2005
Mgi Jnum  J:91388 Mgi Id  MGI:3046804
Citation  Mouse Genome Informatics Scientific Curators (2005) Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations.
abstractText  We represent genes in MGI as sequence objects that contain the genomic sequence between the start and end coordinate (without intron/exon boundaries). Annotated genome features from Ensembl are downloaded using EnsMart and the file is modified to include only sequence coordinates for C57BL/6J, features with UN or random chromosome assignment are also excluded. All of the coordinates are listed from lowest to highest, the coordinate data will be dumped and reloaded with every new assembly of the mouse genome.
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