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Publication : Stride-level analysis of mouse open field behavior using deep-learning-based pose estimation.

First Author  Sheppard K Year  2022
Journal  Cell Rep Volume  38
Issue  2 Pages  110231
PubMed ID  35021077 Mgi Jnum  J:321505
Mgi Id  MGI:6879536 Doi  10.1016/j.celrep.2021.110231
Citation  Sheppard K, et al. (2022) Stride-level analysis of mouse open field behavior using deep-learning-based pose estimation. Cell Rep 38(2):110231
abstractText  Gait and posture are often perturbed in many neurological, neuromuscular, and neuropsychiatric conditions. Rodents provide a tractable model for elucidating disease mechanisms and interventions. Here, we develop a neural-network-based assay that adopts the commonly used open field apparatus for mouse gait and posture analysis. We quantitate both with high precision across 62 strains of mice. We characterize four mutants with known gait deficits and demonstrate that multiple autism spectrum disorder (ASD) models show gait and posture deficits, implying this is a general feature of ASD. Mouse gait and posture measures are highly heritable and fall into three distinct classes. We conduct a genome-wide association study to define the genetic architecture of stride-level mouse movement in the open field. We provide a method for gait and posture extraction from the open field and one of the largest laboratory mouse gait and posture data resources for the research community.
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