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Publication : Persistent RNA virus infection is short-lived at the single-cell level but leaves transcriptomic footprints.

First Author  Reuther P Year  2021
Journal  J Exp Med Volume  218
Issue  10 PubMed ID  34398180
Mgi Jnum  J:327489 Mgi Id  MGI:7261117
Doi  10.1084/jem.20210408 Citation  Reuther P, et al. (2021) Persistent RNA virus infection is short-lived at the single-cell level but leaves transcriptomic footprints. J Exp Med 218(10):e20210408
abstractText  Several RNA viruses can establish life-long persistent infection in mammalian hosts, but the fate of individual virus-infected cells remains undefined. Here we used Cre recombinase-encoding lymphocytic choriomeningitis virus to establish persistent infection in fluorescent cell fate reporter mice. Virus-infected hepatocytes underwent spontaneous noncytolytic viral clearance independently of type I or type II interferon signaling or adaptive immunity. Viral clearance was accompanied by persistent transcriptomic footprints related to proliferation and extracellular matrix remodeling, immune responses, and metabolism. Substantial overlap with persistent epigenetic alterations in HCV-cured patients suggested a universal RNA virus-induced transcriptomic footprint. Cell-intrinsic clearance occurred in cell culture, too, with sequential infection, reinfection cycles separated by a period of relative refractoriness to infection. Our study reveals that systemic persistence of a prototypic noncytolytic RNA virus depends on continuous spread and reinfection. Yet undefined cell-intrinsic mechanisms prevent viral persistence at the single-cell level but give way to profound transcriptomic alterations in virus-cleared cells.
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