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Publication : Xist nucleates local protein gradients to propagate silencing across the X chromosome.

First Author  Markaki Y Year  2021
Journal  Cell Volume  184
Issue  25 Pages  6174-6192.e32
PubMed ID  34813726 Mgi Jnum  J:340231
Mgi Id  MGI:6833911 Doi  10.1016/j.cell.2021.10.022
Citation  Markaki Y, et al. (2021) Xist nucleates local protein gradients to propagate silencing across the X chromosome. Cell 184(25):6174-6192.e32
abstractText  The lncRNA Xist forms approximately 50 diffraction-limited foci to transcriptionally silence one X chromosome. How this small number of RNA foci and interacting proteins regulate a much larger number of X-linked genes is unknown. We show that Xist foci are locally confined, contain approximately 2 RNA molecules, and nucleate supramolecular complexes (SMACs) that include many copies of the critical silencing protein SPEN. Aggregation and exchange of SMAC proteins generate local protein gradients that regulate broad, proximal chromatin regions. Partitioning of numerous SPEN molecules into SMACs is mediated by their intrinsically disordered regions and essential for transcriptional repression. Polycomb deposition via SMACs induces chromatin compaction and the increase in SMACs density around genes, which propagates silencing across the X chromosome. Our findings introduce a mechanism for functional nuclear compartmentalization whereby crowding of transcriptional and architectural regulators enables the silencing of many target genes by few RNA molecules.
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