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Publication : Long-term mesoscale imaging of 3D intercellular dynamics across a mammalian organ.

First Author  Zhang Y Year  2024
Journal  Cell Volume  187
Issue  21 Pages  6104-6122.e25
PubMed ID  39276776 Mgi Jnum  J:358178
Mgi Id  MGI:7779298 Doi  10.1016/j.cell.2024.08.026
Citation  Zhang Y, et al. (2024) Long-term mesoscale imaging of 3D intercellular dynamics across a mammalian organ. Cell 187(21):6104-6122.e25
abstractText  A comprehensive understanding of physio-pathological processes necessitates non-invasive intravital three-dimensional (3D) imaging over varying spatial and temporal scales. However, huge data throughput, optical heterogeneity, surface irregularity, and phototoxicity pose great challenges, leading to an inevitable trade-off between volume size, resolution, speed, sample health, and system complexity. Here, we introduce a compact real-time, ultra-large-scale, high-resolution 3D mesoscope (RUSH3D), achieving uniform resolutions of 2.6 x 2.6 x 6 mum(3) across a volume of 8,000 x 6,000 x 400 mum(3) at 20 Hz with low phototoxicity. Through the integration of multiple computational imaging techniques, RUSH3D facilitates a 13-fold improvement in data throughput and an orders-of-magnitude reduction in system size and cost. With these advantages, we observed premovement neural activity and cross-day visual representational drift across the mouse cortex, the formation and progression of multiple germinal centers in mouse inguinal lymph nodes, and heterogeneous immune responses following traumatic brain injury-all at single-cell resolution, opening up a horizon for intravital mesoscale study of large-scale intercellular interactions at the organ level.
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