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Publication : Multiomics analysis couples mRNA turnover and translational control of glutamine metabolism to the differentiation of the activated CD4(+) T cell.

First Author  Matheson LS Year  2022
Journal  Sci Rep Volume  12
Issue  1 Pages  19657
PubMed ID  36385275 Mgi Jnum  J:331254
Mgi Id  MGI:7386349 Doi  10.1038/s41598-022-24132-6
Citation  Matheson LS, et al. (2022) Multiomics analysis couples mRNA turnover and translational control of glutamine metabolism to the differentiation of the activated CD4(+) T cell. Sci Rep 12(1):19657
abstractText  The ZFP36 family of RNA-binding proteins acts post-transcriptionally to repress translation and promote RNA decay. Studies of genes and pathways regulated by the ZFP36 family in CD4(+) T cells have focussed largely on cytokines, but their impact on metabolic reprogramming and differentiation is unclear. Using CD4(+) T cells lacking Zfp36 and Zfp36l1, we combined the quantification of mRNA transcription, stability, abundance and translation with crosslinking immunoprecipitation and metabolic profiling to determine how they regulate T cell metabolism and differentiation. Our results suggest that ZFP36 and ZFP36L1 act directly to limit the expression of genes driving anabolic processes by two distinct routes: by targeting transcription factors and by targeting transcripts encoding rate-limiting enzymes. These enzymes span numerous metabolic pathways including glycolysis, one-carbon metabolism and glutaminolysis. Direct binding and repression of transcripts encoding glutamine transporter SLC38A2 correlated with increased cellular glutamine content in ZFP36/ZFP36L1-deficient T cells. Increased conversion of glutamine to alpha-ketoglutarate in these cells was consistent with direct binding of ZFP36/ZFP36L1 to Gls (encoding glutaminase) and Glud1 (encoding glutamate dehydrogenase). We propose that ZFP36 and ZFP36L1 as well as glutamine and alpha-ketoglutarate are limiting factors for the acquisition of the cytotoxic CD4(+) T cell fate. Our data implicate ZFP36 and ZFP36L1 in limiting glutamine anaplerosis and differentiation of activated CD4(+) T cells, likely mediated by direct binding to transcripts of critical genes that drive these processes.
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