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Publication : CTCF mutation at R567 causes developmental disorders via 3D genome rearrangement and abnormal neurodevelopment.

First Author  Zhang J Year  2024
Journal  Nat Commun Volume  15
Issue  1 Pages  5524
PubMed ID  38951485 Mgi Jnum  J:350502
Mgi Id  MGI:7663556 Doi  10.1038/s41467-024-49684-1
Citation  Zhang J, et al. (2024) CTCF mutation at R567 causes developmental disorders via 3D genome rearrangement and abnormal neurodevelopment. Nat Commun 15(1):5524
abstractText  The three-dimensional genome structure organized by CTCF is required for development. Clinically identified mutations in CTCF have been linked to adverse developmental outcomes. Nevertheless, the underlying mechanism remains elusive. In this investigation, we explore the regulatory roles of a clinically relevant R567W point mutation, located within the 11(th) zinc finger of CTCF, by introducing this mutation into both murine models and human embryonic stem cell-derived cortical organoid models. Mice with homozygous CTCF(R567W) mutation exhibit growth impediments, resulting in postnatal mortality, and deviations in brain, heart, and lung development at the pathological and single-cell transcriptome levels. This mutation induces premature stem-like cell exhaustion, accelerates the maturation of GABAergic neurons, and disrupts neurodevelopmental and synaptic pathways. Additionally, it specifically hinders CTCF binding to peripheral motifs upstream to the core consensus site, causing alterations in local chromatin structure and gene expression, particularly at the clustered protocadherin locus. Comparative analysis using human cortical organoids mirrors the consequences induced by this mutation. In summary, this study elucidates the influence of the CTCF(R567W) mutation on human neurodevelopmental disorders, paving the way for potential therapeutic interventions.
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