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Publication : Single-Cell RNA Sequencing of Lymph Node Stromal Cells Reveals Niche-Associated Heterogeneity.

First Author  Rodda LB Year  2018
Journal  Immunity Volume  48
Issue  5 Pages  1014-1028.e6
PubMed ID  29752062 Mgi Jnum  J:268924
Mgi Id  MGI:6269054 Doi  10.1016/j.immuni.2018.04.006
Citation  Rodda LB, et al. (2018) Single-Cell RNA Sequencing of Lymph Node Stromal Cells Reveals Niche-Associated Heterogeneity. Immunity 48(5):1014-1028.e6
abstractText  Stromal cells (SCs) establish the compartmentalization of lymphoid tissues critical to the immune response. However, the full diversity of lymph node (LN) SCs remains undefined. Using droplet-based single-cell RNA sequencing, we identified nine peripheral LN non-endothelial SC clusters. Included are the established subsets, Ccl19(hi) T-zone reticular cells (TRCs), marginal reticular cells, follicular dendritic cells (FDCs), and perivascular cells. We also identified Ccl19(lo) TRCs, likely including cholesterol-25-hydroxylase(+) cells located at the T-zone perimeter, Cxcl9(+) TRCs in the T-zone and interfollicular region, CD34(+) SCs in the capsule and medullary vessel adventitia, indolethylamine N-methyltransferase(+) SCs in the medullary cords, and Nr4a1(+) SCs in several niches. These data help define how transcriptionally distinct LN SCs support niche-restricted immune functions and provide evidence that many SCs are in an activated state.
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