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Publication : Secondary DNA structure formation for Hoxb9 promoter and identification of its specific binding protein.

First Author  Yamagishi T Year  2008
Journal  Nucleic Acids Res Volume  36
Issue  6 Pages  1965-75
PubMed ID  18276649 Mgi Jnum  J:172155
Mgi Id  MGI:5004768 Doi  10.1093/nar/gkm1079
Citation  Yamagishi T, et al. (2008) Secondary DNA structure formation for Hoxb9 promoter and identification of its specific binding protein. Nucleic Acids Res 36(6):1965-75
abstractText  Hox genes determine anterior-posterior specificity of an animal body. In mammals, these genes map onto four chromosomal loci in a clustered manner, and their expression is regulated in a coordinated manner according to their chromosomal structure. In the present study, we analysed the Hoxb9 promoter and found that promoter activity in cultured cells is linked to secondary structure formation of promoter DNA. In nuclear extracts, we also detected binding activity specific for secondary-structured DNA. We successfully isolated a candidate gene encoding this specific DNA-binding protein, FBXL10, and demonstrated the effects of the gene product on Hoxb9 promoter activity. Our results suggest that DNA can regulate gene expression by other, non-sequence-specific modes of genetic coding.
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