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HT Experiment :

Experiment Id  E-GEOD-63166 Series Id  GSE63166
Name  Small RNA and transcriptome profiling of mice deficient in either germline Dgcr8 or Dicer Experiment Type  RNA-Seq
Study Type  WT vs. Mutant Source  ArrayExpress
Curation Date  2019-05-30
description  We used Illumina Small RNA and RNA-Seq kits to prepare both small RNA and RNA-Seq libraries from total RNA isolated from either leptotenze/zygotene or pachytene spermatocytes purified from either Dgcr8 or Dicer germline conditional knockout mice. Conditional knockout mice were generated by using a Ddx4 promoter to drive cre excision of either Dgcr8 or Dicer at embryonic day 18. Mixed leptotene/zygotene or pachytene spermatocytes were then isolated from the testis of adult conditional knockout mice, along with paired WT littermates as a control. RNA was isolated from these spermatocytes using Trizol. Small RNA or RNA-Seq libraries were then prepped using Illumina's sequencing library preparation kits.
  • variables:
  • genotype,
  • developmental stage,
  • bulk RNA-seq

1 Publications

Trail: HTExperiment

16 Samples

Trail: HTExperiment