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HT Experiment :

Experiment Id  GSE154616 Name  Mammalian circRNA Atlas
Experiment Type  RNA-Seq Study Type  Baseline
Source  GEO Curation Date  2022-07-14
description  We developed a new pipeline for accurate circRNA detection. We build a new atlas for characterizing circRNA in human, monkey, mouse, rat and drosophila brain. Our approach allows full annotation of circRNAs with fewer false positives and negatives than any individual pipeline or combination of them. Moreover, our approach is more sensitive than any individual pipeline and allows more accurate quantification and larger number of differentially expressed circRNAs. We obtained commercial purified RNA and performed rRNA depletion. Then we treated total RNA with RNAseR and prepared a library.
  • variables:
  • species,
  • anatomical structure,
  • bulk RNA-seq

1 Publications

Trail: HTExperiment

25 Samples

Trail: HTExperiment