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HT Experiment :

Experiment Id  GSE20683 Series Id  E-GEOD-20683
Name  RNA profiling in mouse haemopoiesis Experiment Type  RNA-Seq
Study Type  Baseline Source  GEO
Curation Date  2023-06-19
description  RNA profiling of mouse haemopoetic lineages RNA profiling of mouse haemopoetic lineages. For the isolation and sequencing of mouse granulocyte nuclei, bone marrow from C57BL/6J was harvested from the femur, tibia and spine using a mortar and pestle in PBS supplemented with 2% (v/v) FCS and mature granulocytes purified by flow cytometry as described previously. Purification was validated by reanalysis by flow cytometry and May-Grunwald Giemsa staining. Nuclear purification was carried out using the PARIS kit (Ambion). RNA was extracted from the nuclear fraction using Trizol before deep sequencing. Deep sequencing was performed by GeneWorks (Adelaide, Australia) on the Illumina GAII according to the manufacturer's instructions. For more details, see Supplementary Methods at the NSMB website. Additional files and resources can be found at http://matticklab.com/index.php?title=NuclearTinyRNAs
  • variables:
  • bulk RNA-seq

1 Publications

Trail: HTExperiment

1 Samples

Trail: HTExperiment