| Experiment Id | GSE146043 | Name | The role of the NMD factor UPF3B in olfactory sensory neurons |
| Experiment Type | RNA-Seq | Study Type | WT vs. Mutant |
| Source | GEO | Curation Date | 2024-11-06 |
| description | The UPF3B-dependent branch of the nonsense-mediated RNA decay (NMD) pathway is critical for human cognition. Here, we examined the role of UPF3B in the olfactory system. Single-cell RNA-sequencing (scRNA-seq) analysis demonstrated considerable heterogeneity of olfactory sensory neuron (OSN) cell populations in wild type (WT) mice, and revealed that UPF3B loss influences specific subsets of these cell populations. UPF3B also regulates the expression of a large cadre of anti-microbial genes in OSNs, and promotes the selection of specific olfactory receptor (Olfr) genes for expression in mature OSNs (mOSNs). RNA-seq and Ribotag analyses identified classes of mRNAs expressed and translated at different levels in WT and Upf3b-null mOSNs. Integrating multiple computational approaches, UPF3B-dependent NMD target transcripts that are candidates to mediate the functions of NMD in mOSNs were identified in vivo. Together, our data provides a valuable resource for the olfactory field and insights into the roles of NMD in vivo. Single cell sequencing (10X genomics) from olfactory epithelium from adult mice (with four biological replicates) were performed for this study. For bulk RNAseq, purified mOSNs from four different donor mice were used for library prep and sequencing (pair-end 100). For translome, purified riboTag-labeled RNAs from mOSNs from three different donor mice were used for library prep and sequencing (single-end 50). |
