| Experiment Id | GSE240887 | Name | The intellectual disability risk gene Kdm5b regulates long term memory consolidation in the hippocampus |
| Experiment Type | RNA-Seq | Study Type | WT vs. Mutant |
| Source | GEO | Curation Date | 2024-12-31 |
| description | The histone lysine demethylase KDM5B has been implicated in recessive intellectual disability disorders and heterozygous, protein truncating variants in KDM5B are associated with reduced cognitive function in the normal adult population. To help distinguish between developmental and demethylase-dependent functions of KDM5B in hippocampus-dependent learning and memory, we studied mice homozygous for a Kdm5bDARID allele that lacks demethylase activity. Demethylase-deficient Kdm5bDARID/DARID mice exhibited hyperactivity and long-term memory deficits in hippocampus-dependent learning tasks. The expression of immediate early, activity-dependent genes was downregulated in mice in the home cage (baseline) and hyperactivated upon learning stimulus compared to wildtype mice. The expression of other learning-associated genes was also significantly altered in the Kdm5bDARID/DARID hippocampus. These findings identify KDM5B as a critical regulator of gene expression and synaptic plasticity in the adult hippocampus and suggest that at least some of the cognitive phenotypes associated with KDM5B gene variants are caused by direct effects on learning and memory mechanisms. Total RNA was extracted using Trizol Reagent. RNA was next purified with the Monarch total RNA miniprep kit (New England Biolabs). Hippocampal mRNA profiles of WT and Kdm5bDARID/DARID mice at different timepoints (baseline and 1h and 3h post fear conditioning) were generated by sequencing on the Illumina Nextseq 6000. |
