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Publication : Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disorders.

First Author  Lee S Year  2025
Journal  Cell Volume  188
Issue  5 Pages  1409-1424.e21
PubMed ID  39848247 Mgi Jnum  J:361831
Mgi Id  MGI:7864692 Doi  10.1016/j.cell.2024.12.022
Citation  Lee S, et al. (2025) Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disorders. Cell
abstractText  A meta-genome-wide association study across eight psychiatric disorders has highlighted the genetic architecture of pleiotropy in major psychiatric disorders. However, mechanisms underlying pleiotropic effects of the associated variants remain to be explored. We conducted a massively parallel reporter assay to decode the regulatory logic of variants with pleiotropic and disorder-specific effects. Pleiotropic variants differ from disorder-specific variants by exhibiting chromatin accessibility that extends across diverse cell types in the neuronal lineage and by altering motifs for transcription factors with higher connectivity in protein-protein interaction networks. We mapped pleiotropic and disorder-specific variants to putative target genes using functional genomics approaches and CRISPR perturbation. In vivo CRISPR perturbation of a pleiotropic and a disorder-specific gene suggests that pleiotropy may involve the regulation of genes expressed broadly across neuronal cell types and with higher network connectivity.
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