Type |
Details |
Score |
Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2009 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GUDMAP Consortium |
Year: |
2004 |
Journal: |
www.gudmap.org |
Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2001 |
|
Title: |
Gene Ontology Annotation by the MGI Curatorial Staff |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
Year: |
2014 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GOA curators |
Year: |
2016 |
|
Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
|
Title: |
Rat to Mouse ISO GO annotation transfer |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
Issue: |
4 |
Pages: |
e86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
|
Title: |
MGI Sequence Curation Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
MGD Nomenclature Committee |
Year: |
1995 |
|
Title: |
Nomenclature Committee Use |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
|
•
•
•
•
•
|
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2000 |
|
Title: |
Gene Ontology Annotation by electronic association of SwissProt Keywords with GO terms |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators |
Year: |
2011 |
|
Title: |
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
|
Title: |
Human to Mouse ISO GO annotation transfer |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Lee SD |
Year: |
2019 |
Journal: |
Nat Metab |
Title: |
IDOL regulates systemic energy balance through control of neuronal VLDLR expression. |
Volume: |
1 |
Issue: |
11 |
Pages: |
1089-1100 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6295196 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2019-05-01 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1754723 |
Pattern: |
Not Specified |
Stage: |
TS23 |
Assay Id: |
MGI:6295390 |
Age: |
embryonic day 15.5 |
|
Note: |
Co-localization of staining with Vldlr was noted. |
Specimen Label: |
3H |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
Publication |
First Author: |
Drakew A |
Year: |
2002 |
Journal: |
Exp Neurol |
Title: |
Dentate granule cells in reeler mutants and VLDLR and ApoER2 knockout mice. |
Volume: |
176 |
Issue: |
1 |
Pages: |
12-24 |
|
•
•
•
•
•
|
Pathway |
|
•
•
•
•
•
|
Allele |
Name: |
very low density lipoprotein receptor; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
GO Term |
|
•
•
•
•
•
|
DO Term |
|
•
•
•
•
•
|
Publication |
First Author: |
Hong C |
Year: |
2010 |
Journal: |
J Biol Chem |
Title: |
The E3 ubiquitin ligase IDOL induces the degradation of the low density lipoprotein receptor family members VLDLR and ApoER2. |
Volume: |
285 |
Issue: |
26 |
Pages: |
19720-6 |
|
•
•
•
•
•
|
HT Experiment |
|
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
|
•
•
•
•
•
|
GO Term |
|
•
•
•
•
•
|
Publication |
First Author: |
D'Arcangelo G |
Year: |
1999 |
Journal: |
Neuron |
Title: |
Reelin is a ligand for lipoprotein receptors. |
Volume: |
24 |
Issue: |
2 |
Pages: |
471-9 |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
445
|
Fragment?: |
false |
|
•
•
•
•
•
|
Allele |
Name: |
very low density lipoprotein receptor; mutation 2, Bruce Beutler |
Allele Type: |
Chemically induced (ENU) |
Attribute String: |
Not Specified |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, chemically induced mutation, mutant strain |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Vldlr/Vldlr |
Background: |
C57BL/6J-Vldlr |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
HT Experiment |
|
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
694
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
446
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
445
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
47
|
Fragment?: |
true |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
Reelin is an extracellular matrix serine protease that regulates neuronal migration during embryonic development and acts as a modulator of synaptic transmission in the adult brain []. Reelin acts on its receptors, VLDLR and ApoER2, acting on cytoskeleton, controlling migration and subsequently positioning and stabilizing the cortical neurons [, , ]. In the adult brain, reelin stabilizes the actin cytoskeleton by inducing cofilin phosphorylation. Decreased Reelin expression causes destabilization of neurons, which could have implications for brain disorders, such as epilepsy and schizophrenia []. |
|
•
•
•
•
•
|
Publication |
First Author: |
Förster E |
Year: |
2010 |
Journal: |
Eur J Neurosci |
Title: |
Emerging topics in Reelin function. |
Volume: |
31 |
Issue: |
9 |
Pages: |
1511-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Frotscher M |
Year: |
2009 |
Journal: |
J Neural Transm (Vienna) |
Title: |
Role of Reelin in the development and maintenance of cortical lamination. |
Volume: |
116 |
Issue: |
11 |
Pages: |
1451-5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Frotscher M |
Year: |
2010 |
Journal: |
Trends Neurosci |
Title: |
Role for Reelin in stabilizing cortical architecture. |
Volume: |
33 |
Issue: |
9 |
Pages: |
407-14 |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
938
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
977
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
937
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
142
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
435
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1675
|
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
235
|
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Pramatarova A |
Year: |
2008 |
Journal: |
Mol Cell Neurosci |
Title: |
A genetic interaction between the APP and Dab1 genes influences brain development. |
Volume: |
37 |
Issue: |
1 |
Pages: |
178-86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Niu S |
Year: |
2008 |
Journal: |
J Neurosci |
Title: |
The Reelin signaling pathway promotes dendritic spine development in hippocampal neurons. |
Volume: |
28 |
Issue: |
41 |
Pages: |
10339-48 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lopera F |
Year: |
2023 |
Journal: |
Nat Med |
Title: |
Resilience to autosomal dominant Alzheimer's disease in a Reelin-COLBOS heterozygous man. |
Volume: |
29 |
Issue: |
5 |
Pages: |
1243-1252 |
|
•
•
•
•
•
|
Publication |
First Author: |
Niu S |
Year: |
2004 |
Journal: |
Neuron |
Title: |
Reelin promotes hippocampal dendrite development through the VLDLR/ApoER2-Dab1 pathway. |
Volume: |
41 |
Issue: |
1 |
Pages: |
71-84 |
|
•
•
•
•
•
|
Publication |
First Author: |
Oka K |
Year: |
1994 |
Journal: |
Genomics |
Title: |
Human very-low-density lipoprotein receptor complementary DNA and deduced amino acid sequence and localization of its gene (VLDLR) to chromosome band 9p24 by fluorescence in situ hybridization. |
Volume: |
20 |
Issue: |
2 |
Pages: |
298-300 |
|
•
•
•
•
•
|
Publication |
First Author: |
Huang Y |
Year: |
2005 |
Journal: |
Biochem Biophys Res Commun |
Title: |
Signaling through Disabled 1 requires phosphoinositide binding. |
Volume: |
331 |
Issue: |
4 |
Pages: |
1460-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mikulska-Ruminska K |
Year: |
2019 |
Journal: |
Sci Rep |
Title: |
Dynamics, nanomechanics and signal transduction in reelin repeats. |
Volume: |
9 |
Issue: |
1 |
Pages: |
18974 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This entry represents the EGF-like domains found in Tenascin and Reelin proteins. A common feature of all EGF-like domains is that they are found in theextracellular domain of membrane-bound proteins or in proteins known to besecreted (exception: prostaglandin G/H synthase). The EGF-like domain includessix cysteine residues which have been shown to be involved in disulfide bonds.The structure of several EGF-like domains has been solved. The fold consistsof two-stranded β-sheet followed by a loop to a C-terminal shorttwo-stranded sheet []. Tenascins are extracellular matrix glycoproteins that act both as integrin ligands and as modifiers of fibronectin-integrin interactions to regulate cell adhesion, migration, proliferation and differentiation. Tenascins are usually composed of repeated epidermal growth factor (EGF)-like domains, fibronectin-type III (FNIII) domains and a C-terminal fibrinogen related domain (FReD) [].Reelin is an extracellular matrix serine protease that regulates neuronal migration during embryonic development and acts as a modulator of synaptic transmission in the adult brain []. Reelin acts on its receptors, VLDLR and ApoER2, acting on cytoskeleton, controlling migration and subsequently positioning and stabilizing the cortical neurons [, , ]. In the adult brain, reelin stabilizes the actin cytoskeleton by inducing cofilin phosphorylation. Decreased Reelin expression causes destabilization of neurons, which could have implications for brain disorders, such as epilepsy and schizophrenia []. |
|
•
•
•
•
•
|
Publication |
First Author: |
Kysenius K |
Year: |
2012 |
Journal: |
Cell Mol Life Sci |
Title: |
PCSK9 regulates neuronal apoptosis by adjusting ApoER2 levels and signaling. |
Volume: |
69 |
Issue: |
11 |
Pages: |
1903-16 |
|
•
•
•
•
•
|
Publication |
First Author: |
Howell BW |
Year: |
2000 |
Journal: |
Curr Biol |
Title: |
Dab1 tyrosine phosphorylation sites relay positional signals during mouse brain development. |
Volume: |
10 |
Issue: |
15 |
Pages: |
877-85 |
|
•
•
•
•
•
|
Publication |
First Author: |
Keshvara L |
Year: |
2002 |
Journal: |
J Neurosci |
Title: |
Cyclin-dependent kinase 5 phosphorylates disabled 1 independently of Reelin signaling. |
Volume: |
22 |
Issue: |
12 |
Pages: |
4869-77 |
|
•
•
•
•
•
|
Publication |
First Author: |
Gulsuner S |
Year: |
2011 |
Journal: |
Genome Res |
Title: |
Homozygosity mapping and targeted genomic sequencing reveal the gene responsible for cerebellar hypoplasia and quadrupedal locomotion in a consanguineous kindred. |
Volume: |
21 |
Issue: |
12 |
Pages: |
1995-2003 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ballif BA |
Year: |
2003 |
Journal: |
Brain Res Mol Brain Res |
Title: |
Tyrosine phosphorylation of Disabled-1 is essential for Reelin-stimulated activation of Akt and Src family kinases. |
Volume: |
117 |
Issue: |
2 |
Pages: |
152-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Isosaka T |
Year: |
2006 |
Journal: |
Brain Res |
Title: |
NMDA-receptor proteins are upregulated in the hippocampus of postnatal heterozygous reeler mice. |
Volume: |
1073-1074 |
|
Pages: |
11-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cawley NX |
Year: |
2020 |
Journal: |
Int J Mol Sci |
Title: |
Evaluation of the Potential Role of Proprotein Convertase Subtilisin/Kexin Type 9 (PCSK9) in Niemann-Pick Disease, Type C1. |
Volume: |
21 |
Issue: |
7 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Tan XJ |
Year: |
2010 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Liver X receptor beta and thyroid hormone receptor alpha in brain cortical layering. |
Volume: |
107 |
Issue: |
27 |
Pages: |
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