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Publication : The Human Knockout Gene CLYBL Connects Itaconate to Vitamin B<sub>12</sub>.

First Author  Shen H Year  2017
Journal  Cell Volume  171
Issue  4 Pages  771-782.e11
PubMed ID  29056341 Mgi Jnum  J:251432
Mgi Id  MGI:5926841 Doi  10.1016/j.cell.2017.09.051
Citation  Shen H, et al. (2017) The Human Knockout Gene CLYBL Connects Itaconate to Vitamin B12. Cell 171(4):771-782.e11
abstractText  CLYBL encodes a ubiquitously expressed mitochondrial enzyme, conserved across all vertebrates, whose cellular activity and pathway assignment are unknown. Its homozygous loss is tolerated in seemingly healthy individuals, with reduced circulating B12 levels being the only and consistent phenotype reported to date. Here, by combining enzymology, structural biology, and activity-based metabolomics, we report that CLYBL operates as a citramalyl-CoA lyase in mammalian cells. Cells lacking CLYBL accumulate citramalyl-CoA, an intermediate in the C5-dicarboxylate metabolic pathway that includes itaconate, a recently identified human anti-microbial metabolite and immunomodulator. We report that CLYBL loss leads to a cell-autonomous defect in the mitochondrial B12 metabolism and that itaconyl-CoA is a cofactor-inactivating, substrate-analog inhibitor of the mitochondrial B12-dependent methylmalonyl-CoA mutase (MUT). Our work de-orphans the function of human CLYBL and reveals that a consequence of exposure to the immunomodulatory metabolite itaconate is B12 inactivation.
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