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Publication : Integrated single-cell multiomics uncovers foundational regulatory mechanisms of lens development and pathology.

First Author  Tangeman JA Year  2024
Journal  Development Volume  151
Issue  1 PubMed ID  38180241
Mgi Jnum  J:344241 Mgi Id  MGI:7574182
Doi  10.1242/dev.202249 Citation  Tangeman JA, et al. (2024) Integrated single-cell multiomics uncovers foundational regulatory mechanisms of lens development and pathology. Development 151(1):dev202249
abstractText  Ocular lens development entails epithelial to fiber cell differentiation, defects in which cause congenital cataracts. We report the first single-cell multiomic atlas of lens development, leveraging snRNA-seq, snATAC-seq and CUT&RUN-seq to discover previously unreported mechanisms of cell fate determination and cataract-linked regulatory networks. A comprehensive profile of cis- and trans-regulatory interactions, including for the cataract-linked transcription factor MAF, is established across a temporal trajectory of fiber cell differentiation. Furthermore, we identify an epigenetic paradigm of cellular differentiation, defined by progressive loss of the H3K27 methylation writer Polycomb repressive complex 2 (PRC2). PRC2 localizes to heterochromatin domains across master-regulator transcription factor gene bodies, suggesting it safeguards epithelial cell fate. Moreover, we demonstrate that FGF hyper-stimulation in vivo leads to MAF network activation and the emergence of novel lens cell states. Collectively, these data depict a comprehensive portrait of lens fiber cell differentiation, while defining regulatory effectors of cell identity and cataract formation.
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