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Publication : Complex regulation of Eomes levels mediated through distinct functional features of the Meteor long non-coding RNA locus.

First Author  Gil N Year  2023
Journal  Cell Rep Volume  42
Issue  6 Pages  112569
PubMed ID  37256750 Mgi Jnum  J:344809
Mgi Id  MGI:7579469 Doi  10.1016/j.celrep.2023.112569
Citation  Gil N, et al. (2023) Complex regulation of Eomes levels mediated through distinct functional features of the Meteor long non-coding RNA locus. Cell Rep 42(6):112569
abstractText  Long non-coding RNAs (lncRNAs) are implicated in a plethora of cellular processes, but an in-depth understanding of their functional features or their mechanisms of action is currently lacking. Here we study Meteor, a lncRNA transcribed near the gene encoding EOMES, a pleiotropic transcription factor implicated in various processes throughout development and in adult tissues. Using a wide array of perturbation techniques, we show that transcription elongation through the Meteor locus is required for Eomes activation in mouse embryonic stem cells, with Meteor repression linked to a change in the subpopulation primed to differentiate to the mesoderm lineage. We further demonstrate that a distinct functional feature of the locus-namely, the underlying DNA element-is required for suppressing Eomes expression following neuronal differentiation. Our results demonstrate the complex regulation that can be conferred by a single locus and emphasize the importance of careful selection of perturbation techniques when studying lncRNA loci.
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